Tools to detect synteny blocks regions among multiple genomes
...rth], named in combination of "synteny" and "ortholog", is designed for the study of evolutionary changes of genomic regulatory blocks (GRBs) in vertebrate genomes, and especially the c...2608 days ago
List of motif discovery tools !
...he catalytic mechanisms of enzymes. FFPred -- feature-based function prediction An integrated feature-based function prediction server for vertebrate proteomes. FingerPRINT S...1991 days ago
3006 days ago
Ensembl comparative genomics resources
...genomics infrastructure is extensively reused for the analysis of non-vertebrate species by other projects inc...ts. The consistency of the annotation across species and the focus on vertebrates makes Ensembl an ideal syste...2986 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...columns including Variant, Provean Score and prediciton Rescue-ESE Description: “An online tool for identifying candidate ESEs in vertebrate exons”; Web application...2906 days ago
Post-doctoral Research Assistant in Genetics
...to study genome and chromosome evolution in birds, mammals and other vertebrate species using whole-genome se...chromosomal structures and genome differences between bird and other vertebrate species in attempt to identif...3619 days ago
Postdoctoral Research Assistant at RVC
...ry approaches to generate chromosomal assemblies for sequenced genomes, study chromosomal structures and differences between mammalian and other vertebrate genomes in attempt to identif...2125 days ago
3698 days ago
2890 days ago
3566 days ago
CSA: A high-throughput chromosome-scale assembly pipeline for vertebrate genomes
The pipeline can use information from scaffolded assemblies (for example from HiC or 10X Genomics), or even from diverged (~65-100 Mya) reference genomes for ordering the contigs and thus support the assembly process. This typically results in improved contig N50 when compared to current state of...Tags: CSA, high-throughput, chromosome-scale, assembly, pipeline, vertebrate, genomes
1150 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...ols. The main advantages of SynChro are the following: (i) it is fast (it takes, on a desk computer, on the order of 40 minutes to compare two vertebrate genomes); (ii) it is easy to...1592 days ago