poRe: an R package for the visualization and analysis of nanopore sequencing data
...ols specifically for MinION data. Results: Here we present poRe, a package for R that enables users to manipulate, organize, summarize and visualize MinION nanopore sequencing da...2357 days ago
Dot, an interactive viewer for genome-genome comparison
Dot, an interactive dot plot viewer that allows genome scientists to visualize genome-genome alignments in order to evaluate new assemblies and perform exploratory comparative genomics...2305 days ago
PGAP-X: Extension on pan-genome analysis pipeline
...s and methodologies have been developed and integrated to analyze and visualize genomics structure variation,...and orthologs clusters, are also supported to be further analyzed or visualized in PGAP-X. The workflow and...2296 days ago
MGcV: the microbial genomic context viewer for comparative genome analysis
...ifier and pasting identifiers (one per line) or by using the gene ID search tool or with the BLAST search tool Click "Visualize context". Consult the ...2291 days ago
PhyloGrapher - Graph Visualization Tool
PhyloGrapher is a program designed to visualize and study evolutionary relationships within families of...elements. In general, it is possible to use PhyloGrapher to visualize any type of relations between...2253 days ago
GMOL: An Interactive Tool for 3D Genome Structure Visualization
GMOL was developed based upon our multi-scale approach that allows a user to scale between six separate levels within the genome. With GMOL, a user can choose any unit at any scale and scale it up or down to visualize its structure and retrieve corresponding genome sequences.2239 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
...genes, SNPs etc.) on the chromosome plot. It introduces a special plot viz. the "chromosome heatmap" that, in addition to mapping elements, can visualize the data associated with chro...1853 days ago
REVIGO: Reduced Visualize gene ontology
REViGO can take long lists of Gene Ontology terms and summarize them by removing redundant GO terms. The remaining terms can be visualized in semantic similarity-based scatterplots, in...2108 days ago
AlignQC: A tool for assessing an alignment, and generating reports that are easy to share
...ns, annotations and rarefraction curve analysis. The most basic analysis only requires a BAM file, and outputs a web browser compatible xhtml to visualize/share/store/extract analysis...2101 days ago
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