REVIGO: Reduced Visualize gene ontology
REViGO can take long lists of Gene Ontology terms and summarize them by removing redundant GO terms. The remaining terms can be visualized in semantic similarity-based scatterplots, interactive graphs, or tag clouds. More about REViGO... | Please enter a list of Gene Ontology IDs...Tags: REVIGO, Reduced, Visualize, Gene, Ontology
2099 days ago
maftools : Summarize, Analyze and Visualize MAF Files
With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being widely accepted and used to store somatic variants detected. The Cancer Genome Atlas Project has sequenced over 30 different cancers with sample size of each cancer type being over 200. Resulting ...Tags: maftools, Summarize, Analyze, Visualize, MAF, Files
1223 days ago
Circoletto: visualizing sequence similarity with Circos
Circoletto, an online visualization tool based on Circos, which provides a fast, aesthetically pleasing and informative overview of sequence similarity search results. Online version and downloadable software package for offline use (source code in PERL) freely available at http://bat.ina.c...Tags: Circoletto, visualize, sequence, blast, similarity, Circos
2271 days ago
GeneOverlap: An R package to test and visualize gene overlaps
Overlapping gene lists can reveal biological meanings and may lead to novel hypotheses. For example, histone modification is an important cellular mechanism that can pack and re-pack chromatin. By making the chromatin structure more dense or loose, the gene expression can be turned on or off. Tri...Tags: GeneOverlap, R, package, visualize, gene, overlaps
1950 days ago
Tags: Trelliscope, lexibly, visualize, large, complex, data, detail, R, statistical, programming, environment
1560 days ago
U-Plot: Genome U-Plot sample implementation
The Genome U-Plot is a JavaScript tool to visualize Chromosomal abnormalities in the Human Genome using a U-shape layout.Tags: U-Plot, Genome, U-Plot, implementation, visualize
1518 days ago
GSP4PDB: a web tool to visualize, search and explore protein-ligand structural patterns
GSP4PDB is a user-friendly and efficient application to search and discover new patterns of protein-ligand interaction. GSP4PDB is part of the services provided by the Bioinformatic Group of the University of Talca http://gdblab.com/gsp4pdb/gsp4pdb2/ https://bmcbioinformati...Tags: GSP4PDB, web, tool, visualize, search, explore, protein-ligand, structural, patterns
1506 days ago
Tags: Majiq, Voila, detect, quantify, visualize, complex, de-novo, splicing, variations, RNASeq
1390 days ago