Results for "Viterbi Algorithm"
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Bioinformatics Algorithm Demonstrations and Tutorials
...of selected computer science algorithms important in bioinforma...platform for demonstration of algorithms, since various steps of the...gramming experience. The algorithms demonstrated include two app...g/downloads/bae/BioinformaticsAlgorithmsInExcel.zip One of the best...3697 days ago
RACA: Reference-Assisted Chromosome Assembly
Rreference-Assisted Chromosome Assembly (RACA), an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragments using comparative ge...2944 days ago
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
The RAST (Rapid Annotation using Subsystem Technology) annotation engine was built in 2008 to annotate bacterial and archaeal genomes. It works by offering a standard so...2923 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-ge...ts, MOSAIK employs a hash clustering strategy coupled with the Smith-Waterman algorithm. This method is well-suited t...2900 days ago
- Horizontal gene transfer (HGT), the transfer...architecture. Existing HGT detection algorithms rely on a strong phylogeneti...utability (CRM). Using CRM, the algorithm assigns a confidence score ba...d with additional approaches our new algorithm provides richer picture and b...
2867 days ago
- Faster, more accurate algorithms function prediction "GeneMANIA (Multiple Association Network Integration Algorithm)" have however been developed in recent years and are publicly available on the web, indicating the future direction of function prediction.
2806 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is...ffolding. OPERA is based on an exact algorithm that is guaranteed to minimiz...) including refinements to its basic algorithm (to reduce local errors, impr...ript describing the new features and algorithms is available at Genome...2788 days ago
- Development of cancer is driven by somatic alterations, i...at were previously pinpointed by the segmentation algorithm that was applied to obtain CN...eal recurrent breakpoint events. This easy-to-use algorithm, ‘GeneBreak’, is implemented...
2147 days ago
- The MIRO (the miRNA omics) pipeline is a flexible and powerful tool for the analysis...ntial gene (miRNA) expression profiles and cluster reads using one of several algorithm. MIRO output is furthermore c...
2763 days ago
- Beagle is a software package that performs genot...4.1 has a more accurate genotype phasing algorithm and a very fast and accurate genotype imputation algorithm. Version 4.1 also has several...icle. The citation for Beagle's phasing algorithm is: S R Browning and B L Bro...
2740 days ago
