GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...stently very high sensitivity and precision across different error profiles, rates and sequencing technologies even...rom a given genomic reference and a GTF file. ...lapper is required.Currently, development of a new spliced-alignment mo...2521 days ago
GeneProf: analysis of high-throughput sequencing experiment
GeneProf is a web-based, graphical s...put data within a minimum of hands-on time. (cp. SubConcep...nalysis of ChIP-seq and RNA-seq data in one...ork (cp. Section 'Module Development: Adding new..') and d...;University of Edinburgh and has benefited from funding by the&nbs...2492 days ago
MOSS: A System for Detecting Software Similarity
Moss (for a Measure Of Software Similarity) is an automatic system for determining...ion of Moss has been in detecting plagiarism in programming classes. Since its development in 1994, Moss has been very e...2336 days ago
RNAcon: web-server for the prediction and classification of non-coding RNAs
RNAcon is a web-server for the prediction and classification of non-coding RNAs. I...or the discrimination between coding and ncRNAs and RandomForest-based...d graph properties were used for the development of prediction model. The standalone version (Linux-based command-lin...2481 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
Local sequence alignment is a cornersto...zed the field of bioinformatics, and is currently implemented in all free and commercial bioinformatics pac...eration Sequencing (NGS) and the development of new sequencing tec...ional efficiency, accessibility, and user experience, so that NGS data can...2473 days ago
poRe: an R package for the visualization and analysis of nanopore sequencing data
Motivation: The Oxford Nanopore MinION device represents a unique se...ioinformatics community will need to design and build a suite of tools specif...s to manipulate, organize, summarize and visualize MinION nanopore seq...et/projects/rpore/ . A tutorial and further...2352 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...lly by minimap) as input and outputs an assembly graph in the&.... So far miniasm is in early development stage. It has only been tested on a dozen of PacBio and Oxford Nanopore (ONT) bacteri...q reads.fq # Install minimap and miniasm (requiring gcc and zlib) git...2348 days ago
MetaSim A Sequencing Simulator for Genomics and Metagenomics.
Our software can be used to generate collections of synthetic reads&n..., the program allows the user to design a metagenome by speci...ifferent levels of the NCBI taxonomy, and then to collect reads from th...ved sequences based on source genomes and a given...2341 days ago
Mash: fast genome and metagenome distance estimation using MinHash
Mash is normally distributed as a dependency-free bina...is intended for other operating systems or for development. Mash requires c++11 to build, which is available in and GCC >= 4.8 and OSX >= 10.7. See http://mash...2332 days ago
1380 days ago