Results for "Whole genome resequencing"
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...ent de novo assembly of large genomes using compressed data struct...software package] Comparing genomes and assemblies; variant dete...High-throughput genotyping by whole-genome resequencing. Huang et al., Genome R...ty of California - Santa Cruz Genome Browser is on the FAQ list A manu...3787 days ago
List of bioinformatics open source projects/software.
Open source software is software that can be freely...cal sequences collected from the environment. GenomeSpace http://www.genomespace.org/ Centralized web ap...a software package to analyse next-generation resequencing data...3764 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...on test bed for hypotheses of genome evolution http://acb.qfab.org...ts/gametes/?source=navbarGASP Genometric Analysis Simulation Progr...NOME A rapid coalescent-based whole genome simulator http://www.sp...s/gensim/GWAsimulator A rapid whole genome simulation program http...3744 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis..., rtracklayer, GenomicFeatures and BSgenome. Compared to the IRange...or SNP analysis: snpMatrix BSgenome BSgenome provides an object...the biomaRt, IRanges, Biostrings, BSgenome, GO.d...3632 days ago
Commercial and public next-gen-seq (NGS) software
...ment of Nucleotide Databases. Whole genome alignments to a referen...modular system for the rapid whole genome alignment of finished o...na reads to a FASTA reference genome. By Andrew D. Smith and Zheny...ALLPATHS: De novo assembly of whole-genome shotgun microreads. ALL...3526 days ago
Using Interval Trees to Query Genome Annotations by Position
To work on query related to overlapping genomic features: use IntervalTree python pkg http://informatics.malariagen.net/2011/07/07/using-interval-trees-to-query-genome-annot...3556 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that allows...p/geneindex/id319769866?mt=8 Genome Voyager: iPad Gain first han...sease by analyzing cases with whole genome sequencing data that ha...arning purposes. Visualize whole human genome sequencing data i...3549 days ago
List of Biotechnology Research Laboratory, University, and Centre in India
DEPARTMENT OF BIOTECHNOLOGY Centre For DNA Fingerprinting And Diagnostics (CDFD), Hyderabad ( Institute of Bi...war National Institute Of Immunology, New Delhi National Centre For Plant Genome Resea...2578 days ago
Software packages for next gen sequence analysis
...ment of Nucleotide Databases. Whole genome alignments to a reference gen...modular system for the rapid whole genome alignment of finished o...na reads to a FASTA reference genome. By Andrew D. Smith and Zheny...ALLPATHS: De novo assembly of whole-genome shotgun microreads. ALL...3250 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to understand the different processes inside a cell: proteins ex...azusa.or.jp/ KEGG Atlas Interactive Kyoto Encyclopedia of Genes and Genomes pathways http://www.genome.jp/ke...2294 days ago
