Useful Publications and Websites for Deep Sequencing Data Analysis
...enotyping for molecular breeding of Eucalyptus. Sansaloni et al., BMC Proceedings 5(Suppl 7):P54, 2011 Full Text High-throughput genotyping by whole-genome resequencing. Huang et al., G...3778 days ago
List of bioinformatics open source projects/software.
Open source software is software that can be freely used, changed, and shared (in modified or unmodified form) by anyone. Open source software is made by many people, and...3756 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief description and homepage ALF A Simulation Framework for Genome Evolution http://www.cbrg.ethz.ch/alfBayesi...3736 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis, some of them are as follows Biostrings The Biostrings package from Bioconductor provides an ad...3624 days ago
Commercial and public next-gen-seq (NGS) software
...enomes. By Simpson JT and others at the Canada's Michael Smith Genome Sciences Centre. C++ as source. ALLPATHS - ALLPATHS: De novo assembly of whole-genome shotgun microreads. ALLPATHS...3518 days ago
Using Interval Trees to Query Genome Annotations by Position
To work on query related to overlapping genomic features: use IntervalTree python pkg http://informatics.malariagen.net/2011/07/07/using-interval-trees-to-query-genome-an...3548 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that allows for the opening and analysis of DNA sequencing files - ab1. It includes handy tools such as "Reverse Compl...3540 days ago
List of Biotechnology Research Laboratory, University, and Centre in India
DEPARTMENT OF BIOTECHNOLOGY Centre For DNA Fingerprinting And Diagnostics (CDFD), Hyderabad ( Institute of Bioresources and Sustainable Development (IBSD), Imph...2570 days ago
Software packages for next gen sequence analysis
...omes. By Simpson JT and others at the Canada's Michael Smith Genome Sciences Centre. C++ as source. * ALLPATHS - ALLPATHS: De novo assembly of whole-genome shotgun microreads. ALLPATHS...3241 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to understand the different processes inside a cell: proteins exert their function not in isolation but in a tightly controlled n...2286 days ago