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RNA-sequencing (RNA-seq) has a wide variety of applicatio...A ‐ Seq Data RNA-seq analysis is easy as 1-2-3 with limma,...ript expression analysis of RNA-seq experiments with...xercise An open RNA-Seq data analysis pipeline tutorial...2362 days ago
Converting BLAST output into CSV
Suppose we wanted to do something with all this BLAST output. Generally, tha...ve all matches, or do a reciprocal BLAST, or something. As with...e interested in from the output. Let’s conclude this tutorial...2349 days ago
Run miniasm assembler on nanopore reads !
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes...late_pass_FAH31515//' AONTself10000.eps > AONTself10000final.eps Assemble with min...2342 days ago
Bioinformatics Web Application Development with Perl
Perl's second wave of adoption came from the growth of the wor...and server side programming, with rich client interfaces and po...veloper can do amazing things with modern Perl tools. If you sti...orks and toolkits designed to make web development and deploymen...package that's easy to start with. Mojo's...2333 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
The purpose of this cheat sheet is to introduce biologist and bi...ems in current directory and show directories with a slash and executables with a star ls dir — li...ere just in pwd — show present working directory mkdir dir — make directory dir rm file &m...2292 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of geneti...ingle-celled eukaryotes, but a number of factors combine to make...ve selection, despite potential for genetic incompatibility with the...862 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used...d) (Just fill the fields with any values) A Beginner's Python Tutorial A Byte of Python (3...Guide to Python! (2.6) How to Make Mistakes in Python - Mik... (3.x) Non-Programmer's Tutorial for...2267 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads |...of nanopore sequencing reads with GraphMap | Nature Communicati...//github.com/jts/nanocorrect video - how to install flash plugin on ubu...skubuntu.com/questions/469553/how-to-install-flash-plugin-on-ubuntu-1...2253 days ago
Installing Bio::SCF perl module
Most Perl modules are written in Perl, some use XS (th...shared library libz.so.1.2.11 with gcc.Checking for size_t... Ye...a-UNLOCK-INSTALL[zlib-1.2.11] make []gcc -O3 -D_LARGEFILE64_SOUR...OCK-INSTALL[zlib-1.2.11] sudo make install [][sudo] password for...for style of include used by make... GNUc...2230 days ago
Tools to Predict the Impact of Missense Variants !
Prioritizing missense variants for further experimental investigati...e same protein occurring both in the datasets used for train...us mutations that disrupt highly conserved amino acids within protein‐coding sequences, which...2215 days ago
