HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
HapCUT2 is a maximum-likelihood-based tool for assembling haplotypes from DNA sequence reads, designed to "just work" with excellent speed and accuracy. We found that previously desc...2179 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
...romosome elements (like gene expression) in the form of heat colors which can be highly advantageous in the scientific interpretations and research work. The package provide multiple...1847 days ago
ARC: pipeline which facilitates iterative, reference guided de novo assemblies
...ose reads which should assemble together. Reducing/removing reference bias as compared to mapping based approaches. The software is designed to work in situations where a whole-g...2107 days ago
2080 days ago
Rebaler: program for conducting reference-based assemblies using long reads.
...r making consensus sequences. I made Rebaler for bacterial genomes (specifically for the task of testing basecallers). It should in principle work for non-bacterial genomes as...2053 days ago
2005 days ago
ANItools web: a web tool for fast genome comparison within multiple bacterial strains
...e identity (ANI), you could download and run this program directly. Or you could send us the genome sequence by email. Then we will do the analysis work for you. https://academic.ou...1996 days ago
Genome assembly forensics: finding the elusive mis-assembly
We present the first collection of tools aimed at automated genome assembly validation. This work formalizes several mechanisms for detecting mis-assemblies, and describes their impl...1922 days ago
ansible: Simple, agentless IT automation that anyone can use
Ansible is a universal language, unraveling the mystery of how work gets done. Turn tough tasks into repeatable playbooks. Roll out enterprise-wide protocols with the push of a button. Give your team the tools to automate, solve, and share.1841 days ago
Patterns: a modeling tool dedicated to biological network modeling
It is designed to work with patterned data. Famous examples of problems related to patterned data are: recovering signals in networks after a stimulation (cascade network reverse engineering), analysing periodic signals.1742 days ago