Results for "Workflow"
Bookmarks
...ble at https://github.com/jefftc/changlab. A user first searches in the knowledge base for desired output and then BETSY develops an initial workflow to produce that data which is...1966 days ago
Snakemake workflow: dna-seq-gatk-variant-calling
This Snakemake pipeline implements the GATK best-practices workflow for calling small genomic variants.1747 days ago
Musket - a multistage k-mer spectrum based corrector
...argetting Illumina sequencing. This corrector employs the k-mer spectrum approach and introduces three correction techniques in a multistage workflow. Our performance evaluation r...1552 days ago
Dahak: benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.
...perform various steps in metagenomic analysis workflows including data pre-processin...mework as a robust and reliable containerized workflow system, which will be free fr...origins of data and its movement through the workflow), and reproducibility. More...1488 days ago
DADA2: Fast and accurate sample inference from amplicon data with single-nucleotide resolution
...sp;DADA2 tutorial goes through a typical workflow for paired end Illumina Miseq... present in each sample. The DADA2 Workflow on Big Data goes through...). An ITS-specific version of the DADA2 workflow identifies and verifiabl...1272 days ago
Luigi: a Python package that helps you build complex pipelines of batch jobs.
Luigi is a Python (3.6, 3.7, 3.8, 3.9 tested) package that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization, handli...1047 days ago
QuasR: Quantification and annotation of short reads in R
...ugh the Rhisat2 package). The package aims to cover the whole analysis workflow of typical high throughput se...omplete analysis, making it simple to document, reproduce or share the workflow containing all relevant detai...997 days ago
- The pipeline was developed based on a popular workflow framework Nextflow, composed of four core procedures including reads alignment, assembly, identification and quantification....
962 days ago
- Introduction to Bioinformatics workflows with Nextflow and nf-core Gett...ow Objectives Understand What a workflow management system is. Understand the benefits of using a workflow management system. Explain t.... Introduction to Bioinformatics workflows with Nextflow and nf-core G...
961 days ago
WAAFLE: a Workflow to Annotate Assemblies and Find LGT Events.
...sequenced isolate genomes, identifying LGTs from community metagenomes remains an open problem. To address this, we developed WAAFLE: a Workflow to Annotate Assembl...956 days ago
