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Wire posts

  • Installing a minimal UCSC genome browser mirror in Ubuntu 10.04 64 bits http://goo.gl/PWHxDd #UCSC #Genome

    3892 days ago

  • Convert space separated data to tab separated: perl -p -i -e 's/\s+/\t/g' file.txt #Perl #Tipsoftheday #Perlonliner

    3878 days ago

  • Bioinformatics algorithms lecture notes http://users.csc.calpoly.edu/~dekhtyar/448-Spring2013/index.html #Bioinformatics #Algorithms

    3844 days ago

  • What is C-value paradox? http://selab.janelia.org/publications/Eddy12/Eddy12-preprint.pdf

    3843 days ago

  • Perl Regular expression http://raven.iab.alaska.edu/~ntakebay/teaching/programming/perl2nd/node1.html #Perl #RegularExpression

    3834 days ago

  • Bioinformatics at University of Manchester http://bioinf.man.ac.uk/index.html #Bioinformatics #Manchester #UK

    3799 days ago

  • regex (?(3)foo|fu)bar - Matches foo if 3rd subpattern has matched, fu if not #Tipsoftheday #Regex

    3756 days ago

  • Bioinformatics events this year http://bioinformatics.oxfordjournals.org/events #Events #Conference

    3748 days ago

  • rename all *.txt as *.bak: find . -name "*.txt" | sed "s/\.txt$//" | xargs -i echo mv {}.txt {}.bak | sh #Linux #Rename #Oneliner

    3636 days ago

  • perl -nle 'if (/^>/) { $sl = 0; print; next } next if ($sl >= 200); $_ = substr($_, 0, 200-$sl) if ($sl + length($_) > 200); $sl += length($_); print;' file.fa >new.fa #Perl #Extract #Fasta

    3636 days ago