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Comment on "Benchmarking Perl Module !"
...mance of the module in terms of its execution time and memory usage....ite a simple benchmark program that exercises the functionality of y...de you want to benchmark. Here's an example of a benchmark subroutin...es writing a benchmark program that exercises the functionality of t...418 days ago
Comment on "A quick guide to Phred scaling"
...the more confident we are in the base call. For example, a Phred score of 10 cor...ld decrease in the probability of an error. For example, a Phred score of 20 cor...cter code equal to the Phred score plus 33. For example, a Phred score of 20 is...418 days ago
Comment on "Short-read assembly using Spades !"
...Trimmomatic or FastQC. Running SPAdes: After quality control, the next step is to run SPAdes. This...in FASTQ format. Evaluation of assembly: After running SPAdes, the next step is to evaluate the qual...418 days ago
- ...ads from different sequencing platforms, including Illumina, PacBio, and Oxford Nanopore. It can also sim...It is designed to simulate reads from large genomes and can handle complex genome structures, such as tr...
418 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
...nto your conda-directory. When you install packages via cpan it will also print the folder perl is installing the package into. If you want to be extra-sure, you can also install...419 days ago
Comment on "Short-read assembly using Spades !"
...enerated from Illumina, IonTorrent, PacBio, and Oxford Nanopore sequencing platf...bu.ru/software/spades/). It is available for Linux, macOS, and Windows operating...ontigs.fasta. You can view the contigs using a text editor or a genome browser....424 days ago
Comment on "Tools for Sequence translation !"
...re are several tools available for sequence translation, including: ExPASy Translate Tool: This is a...riendly interface for performing the analysis. These are just a few examples of the many tools avail...424 days ago
Comment on "Tools for Differential expression analysis"
...enes that are differentially expressed between two or more co...for performing differential expression analysis, including:...and testing for differential expression. edgeR: Another...hat is used for differential expression analysis of RNA-Seq d...424 days ago
Comment on "Basic command-line to run BLAST"
...works by breaking down the query sequence into smaller segments, called "words," and searching for matches to those words in the database. It then expands the matches to identify...424 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
To install BioPerl on a macOS system, you can follow these steps: Open the Terminal app on your macOS system. Install Homebrew if you haven't alr...425 days ago
