BOL

Results for "accurately"

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• • Shruti Paniwala@shruti

  

  GMcloser: closing gaps in assemblies accurately with a likelihood-based selection of contig or long-read alignments

  GMcloser uses likelihood-based classifiers calculated from the alignment statistics between scaffolds, contigs and paired-end reads to correctly assign contigs or long reads to gap regions of scaffolds, thereby achieving accurate and efficient gap closure. We demonstrate with sequencing data from...

  Tags: GMcloser, close, gaps, assemblies, accurately, likelihood-based, selection, contig, long-read, alignments, Genome, Assembly

  2149 days ago

• • Neelam Jha@neelam

  

  LTR_retriever: accurately identifies and annotates LTR retrotransposons and use LAI to evaluates the continuity of genome assemblies.

  LTR_retriever is a command line program (in Perl) for accurate identification of LTR retrotransposons (LTR-RTs) from outputs of LTRharvest, LTR_FINDER, and/or MGEScan-LTR and generating non-redundant LTR-RT library for genome annotations. By default, the program will generate whole-genome LTR-RT...

  Tags: LTR_retriever, accurately, identifies, annotates, LTR, retrotransposons, LAI, evaluates, continuity, genome, assemblies.

  1933 days ago