Results for "adapter"
Blogs
BBTools for bioinformatician !
...--------------------------------------------------------------BBMerge.shBBMerge now has a new flag - "outa" or "outadapter". This allows you to automatically detect the adapter sequence of reads with short...2276 days ago
Frequently used bioinformatics tools for viral genome analysis !
...der P, Nastouli E, Keane JA, Kellam P, Otto TD. Bioinformatics. 2015 Jul 15;31(14):2374-6. doi: 10.1093/bioinformatics/btv120. Epub 2015 Feb 28. Adapter sequences: Optimal enzymes fo...1053 days ago
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Bookmarks
- Cutadapt finds and removes adapter sequences, primers, poly-A tails and other typ...RNA sequencing contain the 3’ sequencing adapter because the read is longer th...helps with these trimming tasks by finding the adapter or primer sequences in an err...
2920 days ago
- Cutadapt finds and removes adapter sequences, primers, poly-A tails and other typ...helps with these trimming tasks by finding the adapter or primer sequences in an err...also modify and filter reads in various ways. Adapter sequences can contain IUPAC w...
2705 days ago
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Top-level pages
- ...nce both ends of the same fragment and keep track of the paired data. Adapter Short oligonucleotides which are attached to the DNA to be sequenced. An adapter can provide a priming site fo...
2875 days ago
Bio-Scripts
- ...tId Maximum spot id --spot-groups Filter by SPOT_GROUP (member): name[,...] -W|--clip Remove adapter sequences from reads Comm...
2132 days ago
Installing Porechop on Ubuntu !
...ake clean rm -f porechop/src/adapter_align.o porechop/src/alignmen...p copying build/lib/porechop/adapters.py -> /home/urbe/anaconda3/l...assigned] [--adapter_threshold ADAPTER_THRESHOLD]...s: Control the trimming of adapters from read ends --end_si...2112 days ago
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Tags
Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data
Ktrim is written in C++ for GNU Linux/Unix platforms. After uncompressing the source package, you can find an executable file ktrim under bin/ directory compiled using g++ v4.8.5 and linked with libz v1.2.7 for Linux x86_64 system. If you cou...Tags: Ktrim, extra-fast, accurate, adapter, quality, trimmer, sequencing, data
1184 days ago
Comments
Comment on "Installing Porechop on Ubuntu !"
...asta1,634,477 reads loaded Looking for known adapter sets10,000 / 10,000 (100.0%)...P006 80.0 82.6 SQK-MAP006 Short 76.9 76.0 PCR adapters 1 82.6 78.3 PCR tail 1 76.7...80.8 Barcode 96 (forward) 79.2 76.0 Trimming adapters from read ends SQK-NSK007_Y_...2112 days ago
- ...exa”), SolexaQA now also supports Ion Torrent and 454 data. Trim galore! Trim_galore is a wrapper script to automate quality and adapter trimming as well as quality c...
2143 days ago
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