Results for "algorithm"
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Bioinformatics Algorithm Demonstrations and Tutorials
...ons of selected computer science algorithms important in bioinforma...ng platform for demonstration of algorithms, since various steps of the...programming experience. The algorithms demonstrated include two app....org/downloads/bae/BioinformaticsAlgorithmsInExcel.zip One of the best...3707 days ago
RACA: Reference-Assisted Chromosome Assembly
Rreference-Assisted Chromosome Assembly (RACA), an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragments using com...2954 days ago
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
The RAST (Rapid Annotation using Subsystem Technology) annotation engine was built in 2008 to annotate bacterial and archaeal genomes. It works by offering a standard so...2933 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...e) in the 1000 Genomes Project. To provide highly accurate alignments, MOSAIK employs a hash clustering strategy coupled with the Smith-Waterman algorithm. This method is well-suited t...2909 days ago
- ...genome architecture. Existing HGT detection algorithms rely on a strong phylogeneti...lative mutability (CRM). Using CRM, the algorithm assigns a confidence score ba...combined with additional approaches our new algorithm provides richer picture and b...
2877 days ago
- Faster, more accurate algorithms function prediction "GeneMANIA (Multiple Association Network Integration Algorithm)" have however been developed in recent years and are publicly available on the web, indicating the future direction of function prediction.
2816 days ago
OPERA : Optimal Paired-End Read Assembler
...n as Scaffolding. OPERA is based on an exact algorithm that is guaranteed to minimiz...onwards) including refinements to its basic algorithm (to reduce local errors, impr...e manuscript describing the new features and algorithms is available at Genome...2798 days ago
- ...associated breaks that were previously pinpointed by the segmentation algorithm that was applied to obtain CN...is integrated to reveal recurrent breakpoint events. This easy-to-use algorithm, ‘GeneBreak’, is implemented...
2157 days ago
- ...ference genomes using one of four different mappers, create differential gene (miRNA) expression profiles and cluster reads using one of several algorithm. MIRO output is furthermore c...
2773 days ago
- ...eagle version 4.1 has a more accurate genotype phasing algorithm and a very fast and accurate genotype imputation algorithm. Version 4.1 also has several...ppropriate article. The citation for Beagle's phasing algorithm is: S R Browning and B L Bro...
2750 days ago
