Results for "alignments"
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...nd share DNA sequence reads, reference-based alignments, and variant calls, using Google's cloud infrastructure. Store alignments and variant calls for one gen...rks like MapReduce. Explore data by slicing alignments and variants by genomic range...3487 days ago
Alignment of closely related whole genomes/scaffolds
...ngth, to aid in the study of populations, pan-genomes, and genome evolution.This bookmaks have been created to report new tools for whole genome alignments. Please report new whole gen...3017 days ago
- ...ebrate Genome Biology Group at the Broad Institute. It provides basic data structures for efficient data manipulation (mostly genomic sequences, alignments, variation etc.), as well as...
3007 days ago
Ensembl comparative genomics resources
...date genome data. Ensembl computes pairwise and multiple whole-genome alignments from which large-scale synten...-base conservation scores and constrained elements are obtained. Gene alignments are used to define Ensembl Pr...2987 days ago
YASS :: genomic similarity search tool
...lain text format (it produces local pairwise alignments). Like most of the heuristic...ions, and then tries to extend them to local alignments. This genomic search tool use...rsion) post-processing step to group gapped alignments...2923 days ago
- ...en closely related genomes. These distances can be used to rapidly infer phylogenies for big sets of genomes. Because andi does not compute full alignments, it is so efficient that it s...
2913 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the parts that are orthologous, i.e. following the conserved order an...2913 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...nt mappings for all the generated data (sequencing technologies, low-coverage and exome) in the 1000 Genomes Project. To provide highly accurate alignments, MOSAIK employs a hash cluste...2905 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for assigning taxonomic labels to metagenomic DNA sequences. Previous programs designed for this task have been relativ...2867 days ago
Bioinformatics tools and software
...PILER >De novo genome repeat finder. PILER-CR >Detection of CRISPR repeats in bacterial genomes. QSCORE >Compare two multiple alignments for benchmarking. PALS &...2859 days ago
