Useful Publications and Websites for Deep Sequencing Data Analysis
...Hansen et al., Nucleic Acids Res. 38(12): e131, 2010. PubMedCentral Analyzing and minimizing PCR amplificat...010 Full Text The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencin...3791 days ago
List of bioinformatics open source projects/software.
...viewer LabKey Server http://labkey.com/ platform for integrating, analyzing and sharing data OpenClinica...arily consisting of gap4, gap5 and spin. STAMP Software package for analyzing metagenomic profiles that pro...3769 days ago
Next generation sequencing in R or bioconductor environment
...hIP-Seq Analysis Packages Bioconductor provides various packages for analyzing and visualizing ChIP-Seq data...maps of genes and genomes Genominator: Tools for storing, accessing, analyzing and visualizing genomic data....3637 days ago
Commercial and public next-gen-seq (NGS) software
...Visualization Tool. It provides a generic platform for manipulating, analyzing and viewing WGA data, regardl...emented test version is available here XMatchView - A visual tool for analyzing cross_match alignments. Devel...3531 days ago
Apps for Busy Bioinformatics Researchers !!!
...itunes.apple.com/us/app/geneindex/id319769866?mt=8 Genome Voyager: iPad Gain first hand experience identifying the genomic basis of disease by analyzing cases with whole genome seque...3553 days ago
Software packages for next gen sequence analysis
...Visualization Tool. It provides a generic platform for manipulating, analyzing and viewing WGA data, regardl...ented test version is available here * XMatchView - A visual tool for analyzing cross_match alignments. Devel...3255 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...data Golden Helix: SNP and Variation Suite used for managing, analyzing and visualizing genotypic and...put: SAM MendelScan Description: Last release March 2014; for analyzing sequencing data in family stu...2921 days ago
Genome Assembly Tools and Software - PART1 !!
...by merging alternative assemblies or incorporating alternative data, analyzing the gap region and indicating...Shotgun Transcriptome Data. Trans-ABySS is a software pipeline for analyzing ABySS-assembled contigs from...2698 days ago
Awesome perl frameworks, libraries and software - PART 1
...Perl 6 web framework agentzh/perl-systemtap-toolkit - Real-time analyzing and diagnosing tools for perl... - Perldoc Help Chinese Planning sisimai/p5-Sisimai - Mail Analyzing Interface for email bounce: A...2501 days ago
List of visualization tools for network biology
...nd other data http://www.biologicalnetworks.org BioMiner Modeling, analyzing and visualizing biochemical p...tes.google.com/site/medusa3visualization/ NAViGaTOR Visualizing and analyzing protein-protein interaction n...2300 days ago