Results for "anchor"
Blogs
List of motif discovery tools !
...on in a distributed Web Services Environment Protein function prediction and annotation in an integrated environment powered by web service. ANCHOR -- Prediction of Protein Bind...2006 days ago
Ancient whole genome duplication (WGD) detection tools !
...the genome is good, then wgd syncollinearity analysis can be used . It can help us find the collinearity block in the genome and the corresponding anchor point wgd syn --feature ge...1168 days ago
Bookmarks
- Murasaki is an anchor alignment program that is exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 35 wall minutes), or 8 mammals in 21 CPU hours...
2787 days ago
FSA: Fast Statistical Alignment
...r ten times faster than a direct approach with little loss of accuracy. FSA can quickly align very long sequences using the "anchor annealing" technique for resolving anchors and projecting them with tra...2658 days ago
- +2 more Bookmarks
Pages
Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput short...2699 days ago
Top-level pages
List of In-silico Binding Site Prediction Tools
...http://metapocket.eml.org. PocketQuery: http://pocketquery.csb.pitt.edu/ is a web service for interactively exploring not only hot spot and anchor residues, but hot regions, de...3757 days ago
Tags
- AnchorWave (Anchored Wavefront Alignment) identifies collinear regions via conserved anchors (full-length CDS and full-length exon have been implemented currently) and breaks collinear regions into shorter fragments, i.e., anchor and inter-anchor intervals. By performing sensitive sequence alignm...
Tags: AnchorWave, Anchored, Wavefront, Alignment, collinear, regions, conserved, anchors, CDS, exon, currently, breaks, collinear, regions, fragments, anchor, inter-anchor, intervals
815 days ago
Comments
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...: '-a gotoh -w normal -M 5 -X 4 -G 8 -E 6' overlap - Equivalent to: '-a anchor -w normal --overlapper --eval...ist. alignment. sggotoh - Gotoh alignment with affine gaps. Semiglobal. anchor - anchored alignment with end...2305 days ago
