Results for "annotate"
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...le and easily configurable genome annotation pipeline.Its purpose is to allow smaller eukaryotic and prokaryotic genome projects to independently annotate their genomes and to create g...3010 days ago
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
The RAST (Rapid Annotation using Subsystem Technology) annotation engine was built in 2008 to annotate bacterial and archaeal genomes. It works by offering a standard software pipeline...2930 days ago
- In this exercise, a previously annotated gene will be used to measure the accuracy of different gene finding...bsp;geneid, FGENESH, GenomeScan, GrailEXP and GENEWISE will be used to annotate the sequence. Both search by...
2809 days ago
- ...usage: Rscript Ideoplot.R --heatmap hm.bed --annotate annotations.bed --out ideogram.pdf -or- Rscript Ideoplot.R --annotate annotations.bed Options -...ap (described below) --annotate, -a Add character annotati...
2638 days ago
- ...e resulting data consisting of genetic variants is stored in the form of Mutation Annotation Format. This package attempts to summarize, analyze, annotate and visualize MAF files in an...
2635 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
...tware package that allows users to visualize metagenomic assemblies by plotting coverage (sequencing depth) and GC values of contigs, and also to annotate the plots with taxonomic info...2597 days ago
ChromHMM: Chromatin state discovery and characterization
...Hidden Markov Model that explicitly models the presence or absence of each chromatin mark. The resulting model can then be used to systematically annotate a genome in one or more cell...2573 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and archaeal genomes (chromosomes and plasmids). Genome annotation is a multi-level process that includes...2546 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
dbCAN is a web server and DataBase for automated Carbohydrate-active enzyme ANnotation, funded by the BioEnergy Science Center of the DOE....2533 days ago
Genome Annotation Transfer Utility (GATU)
...g genomes that have already been annotated. For example, whenever a new...le, using GATU, to automatically annotate the new strain using a previo...s from the reference genome (the annotated strain) to the new sequence...s, GATU can also be used to help annotate larger genomes (ie. bacterial...2533 days ago
