NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data
...nsitive/stringent) for different analysis purpose. The output of NextSV is in ANNOVAR-compatible bed format. Users can easily perform downstream annotation using ANNOVAR and disease gen...2108 days ago
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
...ed in Mulan, and conserved transcription factor binding sites identified with Mulan/multiTF can be integrated and overlaid with extensive genome annotation data using GALA.2090 days ago
SeqMonk:A tool to visualise and analyse high throughput mapped sequence data
...to allow comparisons between data sets Statistical analysis of data to find regions of interest Creation of reports containing data and genome annotation...2072 days ago
funannotate: Eukaryotic Genome Annotation Pipeline
Funannotate is a genome prediction, annotation, and comparison software package. It was originally written to annotate fungal genomes (small eukaryotes ~ 30 Mb genomes), but has evolved...2064 days ago
GenomeThreader: Gene Prediction Software
...eThreader was motivated by disabling limitations in GeneSeqer, a popular gene prediction program which is widely used for plant genome annotation.2050 days ago
KOBAS: a web server for gene/protein functional annotation and functional gene set enrichment
KOBAS 3.0 is a web server for gene/protein functional annotation (Annotate module) and functional gene se...accepts gene list as input, including IDs or sequences, and generates annotations for each gene based on multi...2034 days ago
MITOS: improved de novo metazoan mitochondrial genome annotation
Allows automatic annotation of metazoan mitochondrial genomes. MITOS is a pipeline designed to compute a consistent de novo annotation of the mitogenomic sequences....2027 days ago
1980 days ago
Genome Annotation using MAKER tutorial !
...te simplified examples and it took a bit of effort to wrap my head completely around everything. Here I will describe a de novo genome annotation for Boa constrictor ...1972 days ago
GenomeView: genome browser and annotation editor
GenomeView is a genome browser and annotation editor that displays reference sequence, annotation, multiple alignments, short read alignments and graphs. Most major data formats are supported. Local and internet...1959 days ago