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This tutorial assumes no previous knowledge of scripting or programming, yet progresses rapidly toward an intermediate/advanced level of instruction . . . all the whil...3004 days ago
- ...ntiers in Bioinformatics and Computational Biology special issue : Quality assessment and control of high-throughput sequencing data). It contains bash/perl/R scripts for running th...
2888 days ago
Linux command line exercises for NGS data processing
...to the operating system. Most Linux systems utilize Bourne Again SHell (bash), but there are several addit...are using, type [uzi@quince-srv2 ~/linuxTutorial]$ echo $SHELL /bin/bash...2879 days ago
- EXCAVATOR2 is a collection of bash, R and Fortran scripts and codes that analyses Whole Exome Sequencing (WES) data to identify CNVs. EXCAVATOR2 enhances the identification of all ge...
2718 days ago
- ...mum-Weight Matching able to produce high-quality scaffolds from NGS data (reads and contigs). The tool is written in Python 2.7. It also includes a bash script wrapper that calls ali...
2705 days ago
Perlbrew: admin-free perl installation management tool.
...te this line into your terminal: \curl -L https://install.perlbrew.pl | bash Or, if your system does no...l but something else: # Linux \wget -O - https://install.perlbrew.pl | bash # FreeBSD \fetch -o- http...2494 days ago
PilonGrid: parallel wrapper around the Pilon framework
The distribution is a parallel wrapper around the Pilon framework The pipeline is composed of bash scripts, an example mapping.fofn which shows how to input your fastq files (you give paths to the R1 file), and how to launch the pipeline.1975 days ago
- MUM&Co is able to detect:Deletions, insertions, tandem duplications and tandem contractions (>=50bp & <=150kb)Inversions (>=1kb) and translocations (>=10kb)
744 days ago
- ...tics analysis. Prerequisites This is an intermediate lesson and assumes learners have already done some bioinformatics: Familiarity with the BASH command shell, including conc...
732 days ago
