BOL: Results for "bedtools"

Results for "bedtools"

- Surabhi Chaudhary@surabhi
Illumina based assembly pipeline steps !
...Choice of multiple variant calling and consensus sequence generation routes (iVar variants and consensus; default for amplicon data || BCFTools, BEDTools; default for metagenomics dat...
872 days ago

- Jit@jit.aber
bedtools
Collectively, the bedtools utilities are a swiss-army knife of tools...s, set theory on the genome. For example, bedtools allows one tointersect,&...nalyses can be conducted by combining multiple bedtools operations on the UNIX comman...
2622 days ago

- Rahul Nayak@rahul
Useful Publications and Websites for Deep Sequencing Data Analysis
...ormatics 25(14):1754-60, 2009. PubMedCentral Improving SNP discovery by base alignment quality. Li H, Bioinformatics 27(8):1157-8, 2011. PubMed BEDTools: a flexible suite of utilitie...
3774 days ago
- Jitendra Prajapati@jprajapati81
List of Bioinformatics Software Tools for Next Generation Sequencing
...ants near candidate mutations”; Dependent upon- Boost, SAMtools, BEDtools; 3 step workflow Input: BAM...oncoding elements, modeling their mutation count; Dependent on C++ and BEDtools Input: multiple Output:...
2903 days ago
+1 more Top-level pages

- Jit@jit.aber
Get the fasta sequence of the coordinates http://bedtools.readthedocs.io/en/latest/content/tools/getfasta.html #Fasta #Bed #Coordinates #Bedtools
2610 days ago
- Jit@jit.aber
Bedtools wiki https://code.google.com/archive/p/bedtools/wikis/Usage.wiki #Wiki #Bedtools
2518 days ago
+6 more Wire posts

- Shruti Paniwala@shruti
pybedtools
pybedtools is a Python wrapper for Aaron Quinlan's BEDtools programs (https://github.com/arq5x/bedtools), which are widely used for genomi...anipulation or "genome algebra". pybedtools extends BEDTools by offering...ions, at http://pythonhosted.org/pybedtools/. More at http://pythonhoste...
3541 days ago

- Nidhi Rajput@nidhi
Bioinformatics WalkIn at NII
...nowledge of the following: Programming: Perl and Python. Operating system: Linux and Windows. NGS Analysis tools: Maq, BWA, Bowtie, SAM tools, BEDTools, MACS, Galaxy, FastQC, Bismar...
3160 days ago

- Neelam Jha@neelam
Genome Covered !
zero=$(bedtools genomecov -ibam BAM -g hg38.fasta -bga | awk '$4==0 {bpCountZero+=($3-$2)} {print bpCountZero}' | tail -1) nonzero=$(bedtools genomecov -ibam BAM -g hg38.fasta -bga | awk '$4>0 {bpCountNonZero+=($3-$2)} {print bpCountNonZero}' | tail -1) percent=$(bc
2204 days ago
- Jit@jit.aber
Installing pb-assembly on Linux !
...bcftools: 1.9-h4da6232_0 bioconda bedtools: 2.27.1-he9418...##########################################| Time: 0:00:00 3.76 MB/s bedtools-2.27. 100% |#################...
2029 days ago
+10 more Bio-Scripts