Results for "benchmarking and designing tools"
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YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequenc...he heuristic pairwise local alignment tools for DNA sequences (FASTA, B...detect potential similarity regions, and then...multiple, possibly overlapping seeds and a new hit criterion to ensure a...2918 days ago
Painless package development for R
Devtools makes package development a breeze: it wo...ions for code structure, adding efficient tools to support the cycle of package development. With devtools, developing a package becomes...u get started be sure to check out: devtools Google Group – htt...2917 days ago
- High-throughput genomics has revolutionized biological research,...ed sequences remains complicated and mostly limited to technical m...nt of genome assembly, gene set, and transcriptome completeness ba...hensive lineage-specific sets of Benchmark...s, metazoans, fungi, eukaryotes, and b...
2910 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing read.... Uniquely among current mapping tools, MOSAIK can align reads gen...ms SOLiD, Roche 454, Ion Torrent and Pacif...ncing technologies, low-coverage and exome) in the 1000 Genomes Proj...2899 days ago
- gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise gkno. http://gkno.me/how-to/install.html http://gkno.me/software.html
2899 days ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
2898 days ago
- Database to Database Conversions db2db allows for conversions of identifiers from one da...the input selected. Then select one or more output types and add y...ance will vary widely depending on the number of outputs and t...
2887 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise...y: exploring raw genome data for contaminants, symbionts and paras...submitted 2013-10-01 to Frontiers in Bioinformatics and C...
2876 days ago
- Horizontal gene transfer (HGT), the transfer of genetic materia...enetic signal is usually weak and the nucleotide composition is...al microbiology, where understanding the emergence of new virul...ons according to both synteny and mutab...hod to existing HGT detection tools using a larger strain data se...
2867 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently used tools for NGS analysis as well as...as it is a language in itself and is us...red to the other command line tools such as grep, sed, perl etc....a program that takes your commands from the keyboard and gives th...2867 days ago
