Results for "benchmarking and designing tools"
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Comparative genomics remains a pivotal strategy to study the evolution of gene organization, and this primacy is reinforced by...Despite this growth, bioinformatic tools available to visualize and compa...a time, thus limiting the breadth and the nature of the question that...2702 days ago
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
Next Generation Sequencing has totally changed genomics: we are able to produce huge...eing on top of this list. Despite efforts to design tools abl...y related reference. The idea is to combine de novo and reference-guided assembly in or...2699 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
MeGAMerge MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs)...to run on Linux. Requirements: You will need to have the following tools installed and in $PATH, or added to $binpath...2699 days ago
Finding Patterns in Biological Sequences
In this report we provide an overview of known techniques for discovery of patterns of biological sequences (DNA and proteins). We also provide biological motivation, and metho...tterns. Finally we list publicly available tools and databases for pattern dis...2696 days ago
- Motif based sequence analysis suits The MEME Suite allow...ifs with arbitrary insertions and deletions (GLAM2). In additio...very, the MEME Suite provides tools for...comprised of a collection of tools that work together, as shown...ll need to download and install a local copy...
2695 days ago
- gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise gkno. More at http://gkno.me/
2670 days ago
- v0.0 by Glenn Hickey (hickey@soe.ucsc.edu) Progressive Cactus is a who...er python 2.7 wget 64bit processor and build environment 150GB+ of...ariable. In order to run the included tools (ex...that all dependencies are also built and included in the submodules/ dir...
2670 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
The number of completely sequenced genomes is continuously rising, allowing for compa...letions or from rearrangement events. Computational tools tha...iding a visualization that still allows for a quick and comprehensive interpretation of...2669 days ago
- Harvest is a suite of core-genome alignment and visualization tools for quickly analyzing thousands of intraspecific microbial g...lls, recombination detection, and phylogenetic trees. Tools Parsnp - Core-genome...
2656 days ago
fineSTRUCTURE v2 & GLOBETROTTER
Software available at this site FineSTRUCTURE version 2, a pi...peline for running ChromoPainter and FineSTRUCTURE for population.... AdmixturePainting, A set of R tools to inmterpret the results of ADMIXTURE and STRUC...page provides information about and downloads for methodology for C...2643 days ago
