Results for "benchmarking and designing tools"
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Linux for bioinformatician !!!
Linux, free operating system for computers, provides several powerful admin tools and utilities which will help you...hat these no so user-friendly tools are and how to use them, you...series is to help you understand system admin as well as basic tools, which will help you to becom...3699 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinformaticians mung and wrangle around massive amount...cs text. There are several "standardized" file formats (FASTQ, SAM, VCF, etc.) and some tools for manipulating them (fastx toolkit, samtools, vcftools, etc.), there are...3621 days ago
Next generation sequencing in R or bioconductor environment
...efficient sequence management and analysis in R. It contains many speed and memory effective string conta...ages including ShortRead, Rsamtools, rtracklayer, GenomicFeatures and BSgen...rations of directional reads, and uses DNA fragment length prior...3618 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and reference assembly of Sanger,...ack to the reference genomes, and carry out post-analysis. ZOOM i...jiangh/SeqMap/) - work like ELand, can do 3 or more bp mismatches...RSAT - RSAT: RNA-Seq Analysis Tools. RNASAT is developed and main...3512 days ago
- Since few years miRNA has shown to play important role in therapeutic related research and also known to play vital role...re are some important DBs and tools rel...g data analysis : http://tools.genxpro.net/omiras/ miRNApat...edu/mireditar/ Animal, plant and virus miRNA DB : http://le...
3489 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that allows for the opening and analysis of DNA sequencing files - ab1. It includes handy tools such as "Reverse Complement...iles - ab1. It includes handy tools suc...mmals, plants, invertebrates, and bacteria. Link to gene info on...3535 days ago
- ...ore genomics, transcriptomics and proteomics data, interactions...the genes, their transcripts, and their gene products. However, existing tools and...2375 http://bioinformatics.mdanderson.org/MicroarrayCourse/Lectu...e2.pdf Impotant Database and Tools: GeneMANIA, Cytoscape, ...
3489 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and reference assembly of Sanger,...ent suffix tree library, seed-and-extend alignment, SNP detection...ap layout paradigm. By D. Hernandez, P. François, L. Farin...RSAT - RSAT: RNA-Seq Analysis Tools. RNASAT is developed and main...3236 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to understand the different processes insid...upporting hiding of cofactors and drawing of chemical structure...p://tinyurl.com/vitapad/ Web tools for pathways ArrayXPath ...hway diagrams in a visual way and the annotation of the component...2280 days ago
Binding Site Prediction in Protein !
The interaction between proteins and other molecules is fundamenta...tion sites on protein surface and tools for predicting the structur...ints. Ligand Binding Sites 3DLigand...;PASS, Q-SiteFinder and SURFNET2195 days ago
