Results for "benchmarking and designing tools"

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  • http://bioruby.org/ - BioRuby comes with a comprehensive set of free development tools and libraries for bioinformatics and molecular biology #RubyOnRail #BioInfo

    2301 days ago

  • get the fasta genes using gff3 and genome.fa sequence: ~/Tools/bedtools2/bin/bedtools getfasta -fi vaga.fa -bed Adineta_vaga.v2.gff3 -fo Adineta_vaga_genes.fa

    2297 days ago

  • PacBio genome assembly tools https://academic.oup.com/bib/advance-article/doi/10.1093/bib/bbx147/4590140 #PacBio #Assembly #Tools #SMRT #LongReads

    2154 days ago

  • #Zero coverage regions ~/Tools/bedtools2/bin/bedtools genomecov -ibam PvsH_aln_sorted.bam -bga | awk '$4==0' > ZERO_coverage_regions.txt

    2140 days ago

  • Useful #tools for #genome analysis https://gigascience.biomedcentral.com/articles/10.1186/s13742-015-0077-2

    2118 days ago

  • Variant Effect Predictor http://www.ensembl.org/Tools/VEP #Variant #Effect #Predictor

    2061 days ago

  • Victorian Bioinformatics Consortium http://www.vicbioinformatics.com/software.shtml #Bioinformatics #Tools

    1964 days ago

  • #Split the #BAM file $ /home/urbe/Tools/bamtools/bin/bamtools split -in improved3.fasta.sorted.bam -reference #bamtools

    1960 days ago

  • Export the PATH in Linux $ PATH="/home/urbe/Tools/ALLHiC/scripts:${PATH}" and then $ export PATH #Path #Set #Variable

    1959 days ago

  • Gene prediction tools http://genome.crg.es/courses/laCaixa05/Prediction/index.html #Genes #Predicts

    1959 days ago