HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and re...ting environment Retrieving and storing sequencing files (your own data or from p...a reference genome Manipulating SAM/BAM alignment files Visualizing data in a genome...2945 days ago
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Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently used tools fo...analysis as well as giving experience in writing one-liners. Copy the required files to your current directory, ch...2888 days ago
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BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circula...raw, unassembled sequence data. BRIG also accepts SAM-formatted read-mapping files enabling genomic regions pres...2788 days ago