Results for "binding"
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...for user interactivity such as drag-and-drop, copy-and-paste, in-place text editing, tooltips, context menus, automatic layouts, templates, data binding and models, transactional sta...2734 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...end of every gene in the experimentally verified Ecogene data set (except those containing introns). It possesses a very sophisticated ribosomal binding site scoring system that enab...2697 days ago
- ...y information. If amplification primers were used (e.g., to isolate a variable region of the 16S gene, or the constant regions around zinc finger binding residues), they can be remove...
2672 days ago
zPicture: A dynamic blastz alignment visualization
zPicture is a dynamic alignment and visualization tool that is based on blastz alignment program utilized by PipMaker. zPicture alignments can be automatically submitted to rVista 2.0 to identify conserved transcription factor binding sites.2300 days ago
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
...TF program for detecting evolutionarily conserved transcription factor binding sites in multiple alignments....ted in GALA can be viewed in Mulan, and conserved transcription factor binding sites identified with Mulan/m...2094 days ago
FRODOCK 2.0: fast protein–protein docking server
...ental distance constraints. The competitive success rates and efficiency achieved allow the retrieval of reliable potential protein–protein binding conformations that can be fur...2040 days ago
- An increasing number of studies are mapping protein binding and nucleotide modifications sites throughout the transcriptome. Often, these sites cluster in certain regions of the trans...
2021 days ago
ChIPulate: A Python3 framework to simulate read counts in a ChIP-seq experiment
...iological and experimental sources of variation on several outcomes of a ChIP-seq experiment, viz., the recoverability of the TF binding motif, accuracy of TF-DNA binding detection, the sensitivity of...1881 days ago
HNADOCK: a nucleic acid docking server for modeling RNA/DNA–RNA/DNA 3D complex structures
The HNADOCK server is to predict the binding complex structure between two nucleic acid molecules through a hierarchical docking algorihtm of an FFT-based global search strategy and a...1443 days ago
- ...ability to support amino acid sequences as input and a hybrid docking strategy in which experimental information about the protein–protein binding site and small-angle X-ray sc...
1432 days ago
