Results for "bio marker discovery"
Bookmarks
The programs are listed in alphabetical order, Look at the individual applications or go to the GROUPS page to search by category. EMBASSY applications are described in separate documentation for each package. Applications in the current release2836 days ago
- Genome STRiP (Genome STRucture In Populations) is a suite of tools for discover...ower across genomes and processing more genomes provide better results.To run discovery or genotyping on a single seq...
2795 days ago
- A probabilistic framework for structural variant discovery. Ryan M Layer, Colby Chiang, Aaron...Hall. 2014. "LUMPY: a Probabilistic Framework for Structural Variant Discovery." Genome Biology 15 (6): R84. doi:10.1186/g...
2807 days ago
Method in Comparative genomics !!
We present methods for the automatic determination of genome correspondence. The alg...ion and in that way differ from the current literature on computational motif discovery. Based on the genome-wide con...2731 days ago
- Murasaki is an anchor alignment program that is exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 35 wall minutes), or 8 mammals in 21 CPU...
2771 days ago
- ART is a set of simulation tools to generate synthetic next-generation sequencing rea...atforms: Illumina's Solexa, Roche's 454 and Applied Biosys...ment, de novo assembly, SNP and structure variation discovery. ART was used as a primary to...
2737 days ago
Finding Patterns in Biological Sequences
In this report we provide an overview of known techniques for discovery of patterns of biological sequences (DNA and proteins). We also provide biological motivation, and methods of b...vailable tools and databases for pattern discovery. On-line supplement is availa...2688 days ago
- Motif based sequence analysis suits The MEME Suite allows the biologist to discover novel motifs i...ein sequences. It provides motif discov...entary strengths. It also allows discovery of motifs with arbitrary inse...n motifs (SpaMo), predicting the biological roles of motifs (GOMo), meas...
2687 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
PBJelly - the genome upgrading tool. PBHoney - the structural variation discovery tool Both are contained within t...at aligns long sequencing reads (such as PacBio RS...----- PBHoney -----Read The Paperhttp://www.biomedcentral.com/1471-2105/15/180/abst...2621 days ago
Laj: viewing and manipulating the output from pairwise alignment programs
Laj is a tool for viewing and manipulating the output from pairwise alignment programs such as blastz. It can display interactive dotplot, pip, and text representations...2619 days ago
