simuG: a general-purpose genome simulator
Simulated genomes with pre-defined and random genomic variants can be very useful for benchmarking genomic and bioinformatics analyses. Here we introduce simuG, a lightweight tool for sim...1625 days ago
Machine learning training and courses in bioinformatics !
...2017-I529/ More tutorial at http://calla.rnet.missouri.edu/cheng_courses/mlbioinfo/mlbioinfo.htm http://www.raetschlab.org/lectures/MLBioinformatics http://www.raetschlab.org/le...1592 days ago
De novo Genome Assembly for Illumina Data
Written and maintained by Simon Gladman - Melbourne Bioinformatics (formerly VLSCI) Protocol Overview / Introdu...o assembly for small to medium sized genomes. https://www.melbournebioinformatics.org.au/tutorials/tutorials/as...1572 days ago
Understanding your reads and mapping !
One of the best tutorial for beginners ... https://bioinformatics-core-shared-training.github.io/cruk-summer-school-2017/Day1/Session4-seqIntro.html1563 days ago
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netGO: R-Shiny package for network-integrated pathway enrichment analysis
...idopsis thaliana,and Yeast)These data are available from netGO-Data repository. https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btaa077/57286351549 days ago
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Apollo: A Sequencing-Technology-Independent, Scalable, and Accurate Assembly Polishing Algorithm
...Firtina et al. (preliminary version at https://arxiv.org/pdf/1902.04341.pdf More at https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btaa179/5804978?rss=1...1516 days ago
JCVI:Python utility libraries on genome assembly, annotation and comparative genomics
Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics. https://github.com/tanghaibao/jcvi More at https://github.com/tanghaibao/jcvi/wiki1515 days ago