Results for "blasr"
Blogs
Software and Tools to detect structure variation with long reads !!
...from a combination of sequencing platforms. There are two pieces of software in this release: (1) a pre-processor that takes machineformat (.m5) BLASR files, and (2) MultiBreak-SV....2622 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
...ers for Oxford Nanopore MinION long reads LQSDALIGNER, Celera OLC Nanocorrect, Nanopolish correctorhttps://github.com/jts/nanopolish PBcRHGAP or BLASR, Celera OLC PBcR correctorhtt...2335 days ago
Bookmarks
WGS Celera Assembler version 8.3rc2
...Biosciences/pbdagcon PBDAGCON], [https://github.com/PacificBiosciences/BLASR BLASR], and parts of the [https://g...2,4K Apr 10 11:41 asmToAGP.pl-rwxrwxr-x 1 urbe urbe 7,6M Apr 10 11:41 blasr-rwxrwxr-x 1 urbe urbe 1,6M Ap...2597 days ago
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus
...upports various types of dat HiSeq/MiSeq (100-500bp) Unitigs 454, ... proovread maps high coverage data to pacbio reads (bwa mem, blasr, daligner) in multiple iterat...2327 days ago
- +2 more Bookmarks
Files
- ...m/BioInf-Wuerzburg/proovread/raw/master/util/blasr-1.3.1/blasr I'm running "OPERA-LG_v2.0.5...LCON-Unzip-Scaff.bamMapping long-reads using blasr.../home/urbe/Tools/SSpace/SSP.../home/urbe/Tools/SSpace/SSPACE-LongRead_v1-1/blasr: Permission deniedSorting map...
2166 days ago
Bio-Scripts
Installing pb-assembly on Linux !
...blas: 1.0-mkl blasr: 5.3.2-hac9d22c_3 bioconda blasr_libcpp: 5.3.1-hac9...2049 days ago
Setting up falconUnzip conda environments for genome assembly !
...blas: 1.0-mkl blasr: 5.3.2-hac9d22c_3 bioconda blasr_libcpp: 5.3.1-hac9...2005 days ago
Tags
- DOWNLOAD LINK: https://github.com/BioInf-Wuerzburg/proovread/raw/master/util/blasr-1.3.1/blasr I'm running "OPERA-LG_v2.0.5/bin/preprocess_reads.pl" and have the following error: fail to open file './temporarySam' [bwa_aln_core] write to the disk... 0.09 sec[bwa_aln_core] 70778880 sequences ha...
Tags: blasr, download, scaffolder, OPERA-LG, temporarySam, genome, contigs
2166 days ago
Comments
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...ormat. [auto] -L, --out-fmt STR Format in which to output results. Options are: sam - Standard SAM output (in normal and '-w overlap' modes). m5 - BLASR M5 format. [sam] -I, --index-...2307 days ago
Comment on "List of popular bioinformatics software/tools"
Mapping single molecule sequencing reads using Basic Local Alignment with Successive Refinement (BLASR) http://bix.ucsd.edu/projects/blasr/3024 days ago
