Results for "blasr"
Blogs
Software and Tools to detect structure variation with long reads !!
...from a combination of sequencing platforms. There are two pieces of software in this release: (1) a pre-processor that takes machineformat (.m5) BLASR files, and (2) MultiBreak-SV....2612 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
...ers for Oxford Nanopore MinION long reads LQSDALIGNER, Celera OLC Nanocorrect, Nanopolish correctorhttps://github.com/jts/nanopolish PBcRHGAP or BLASR, Celera OLC PBcR correctorhtt...2325 days ago
Bookmarks
WGS Celera Assembler version 8.3rc2
...Biosciences/pbdagcon PBDAGCON], [https://github.com/PacificBiosciences/BLASR BLASR], and parts of the [https://g...2,4K Apr 10 11:41 asmToAGP.pl-rwxrwxr-x 1 urbe urbe 7,6M Apr 10 11:41 blasr-rwxrwxr-x 1 urbe urbe 1,6M Ap...2587 days ago
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus
...upports various types of dat HiSeq/MiSeq (100-500bp) Unitigs 454, ... proovread maps high coverage data to pacbio reads (bwa mem, blasr, daligner) in multiple iterat...2317 days ago
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Files
- ...m/BioInf-Wuerzburg/proovread/raw/master/util/blasr-1.3.1/blasr I'm running "OPERA-LG_v2.0.5...LCON-Unzip-Scaff.bamMapping long-reads using blasr.../home/urbe/Tools/SSpace/SSP.../home/urbe/Tools/SSpace/SSPACE-LongRead_v1-1/blasr: Permission deniedSorting map...
2156 days ago
Bio-Scripts
Installing pb-assembly on Linux !
...blas: 1.0-mkl blasr: 5.3.2-hac9d22c_3 bioconda blasr_libcpp: 5.3.1-hac9...2039 days ago
Setting up falconUnzip conda environments for genome assembly !
...blas: 1.0-mkl blasr: 5.3.2-hac9d22c_3 bioconda blasr_libcpp: 5.3.1-hac9...1994 days ago
Tags
- BLASR (Basic Local Alignment with Successive Refinement) for mapping Single Molecule Sequencing (SMS) reads that are thousands to tens of thousands of bases long with divergence between the read and genome dominated by insertion and deletion error. Here is how I use the blasr to align PacBio rea...
Tags: Mapping, single, molecule, sequencing, reads, Basic, Local, Alignment, Successive, Refinement, BLASR
2179 days ago
- DOWNLOAD LINK: https://github.com/BioInf-Wuerzburg/proovread/raw/master/util/blasr-1.3.1/blasr I'm running "OPERA-LG_v2.0.5/bin/preprocess_reads.pl" and have the following error: fail to open file './temporarySam' [bwa_aln_core] write to the disk... 0.09 sec[bwa_aln_core] 70778880 sequences ha...
Tags: blasr, download, scaffolder, OPERA-LG, temporarySam, genome, contigs
2156 days ago
Comments
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...ormat. [auto] -L, --out-fmt STR Format in which to output results. Options are: sam - Standard SAM output (in normal and '-w overlap' modes). m5 - BLASR M5 format. [sam] -I, --index-...2297 days ago
Comment on "List of popular bioinformatics software/tools"
Mapping single molecule sequencing reads using Basic Local Alignment with Successive Refinement (BLASR) http://bix.ucsd.edu/projects/blasr/3014 days ago
