2883 days ago
Genome Assembly Tools and Software - PART1 !!
...reference bias as compared to mapping based approaches. Tran...cy comparable to conventional mapping based pipelines (see evaluati...ituations that may arise when mapping contigs to the reference geno...rence genome. This is done by mapping the contigs onto the referenc...2700 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both e...from a normal distribution. Therefore, in the absence of structural variants, mapping locations of the paired ends...2536 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have originated from two...g sequence isolated at random from a cDNA library, used for identification and mapping of coding sequences, for disc...2476 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has been widely used since Measures the&...g heterogeneous systems, e.g. early development studies, complex tissues (brain)...2365 days ago
2365 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads...This is different than with ordinary mapping. If a genome (say, human) con...ains an exact repeat somewhere, reads mapping to it will be mapped ambiguou...BBSplit is a tool that bins reads by mapping to multiple references simult...2328 days ago
List of visualization tools for network biology
Network analysis is any structured technique used to mathematically analyze a c...es http://www.cs.helsinki.fi/group/sysfys/software/rematch/ SNOW Gene mapping on a reference or human prote...2302 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing fin...ch.uic.edu/DNannotator.htm JVM Java Visual Mapping tool for NGS reads http://ww...broadinstitute.org/igv/ ZOOM Lite NGS data mapping and visualization software h...2298 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bioinformatics | Oxfo...matics.biomedcentral.com/articles/10.1186/1471-2105-15-302 Fast and sensitive mapping of nanopore sequencing reads...2255 days ago