Integrative Genomics Viewer (IGV) tutorial
The Integrative Genomics Viewer (IGV) from the Broad Center allows you to view several types of data files involved in any NGS...are mapped, gene annotations, and predicted genetic variants. http://www.broad...3584 days ago
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RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, represents a novel method for the efficient and robust de novo reconstruction of tran...2964 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only...e latest source code from here. Stable versions can also be downloaded from the Broad...2913 days ago
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GeneProf: analysis of high-throughput sequencing experiment
GeneProf is a web-based, graphical software suite that allows users to analyse data produced using high-throughput...satile modules:Advanced users and data analysis experts benefit from GeneProf's broad...2495 days ago
karyoploteR: plot whole genomes with arbitrary data
karyoploteR is an R package to create karyoplots, that is, representations of whole genomes with arbitrary dat...ryoploteR is to offer the user an easy way to plot data along the genome to get broad...1950 days ago
ARCS: scaffolding genome drafts with linked reads
ARCS, an application that utilizes the barcoding information contained in linked reads to further organize draft ge...x-fold, using moderate coverage (25-fold) Chromium data. We expect ARCS to have broad...2251 days ago
molinspiration: broad range of cheminformatics software tools supporting molecule manipulation
Molinspiration offers broad range of cheminformatics software tools supporting molecule manipulation and processing, including SMILES and SDfile conversion,...1931 days ago