FSA: Fast Statistical Alignment
...us protein, RNA or DNA sequences. Much as distance-based phylogenetic reconstruction methods like Neighbor-Joining build a phylogeny using only pairwise divergence estimates, FSA builds a multiple alignment using o...2647 days ago
poRe: an R package for the visualization and analysis of nanopore sequencing data
...B port of a laptop, the MinION has huge potential applications. To enable these applications, the bioinformatics community will need to design and build a suite of tools specifically...2357 days ago
Mash: fast genome and metagenome distance estimation using MinHash
...tps://github.com/marbl/Mash/releases). This source distribution is intended for other operating systems or for development. Mash requires c++11 to build, which is available in and GC...2338 days ago
Building Web UIs With Mojolicious Perl
...lopment experience. It thus has no hard dependencies, comes with a built-in development and production server and many other features one needs to build a web application. It's easy...2324 days ago
Frontend: Perl Web framework documentation - Andrej Sali Lab
...subclassed for each web service. This class is then used to display the web pages using a set of CGI scripts that are set up automatically by the build system....2311 days ago
Alfred: BAM Statistics and Feature Counting
The easiest way to get Alfred is to download a statically linked binary from the Alfred github release page. Alternatively, you can build Alfred from source. Alfred dependencies...2296 days ago
circosJS: d3 library to build circular graphs
Circos is a javascript library to easily build interactive graphs in a circular layout. It's based on d3.js. It aims to be a javascript version of the Circos software. You should consider using Circos to show: relationships between entities periodical data2275 days ago
ALPACA: A hybrid strategy for assembly of genomic DNA shotgun sequencing reads.
ALPACA requires Celera Assembler 8.3 or later. It is recommended to build Celera Assembler from source. (Why? The pre-built binaries CA_8.3rc1 and CA8.3rc2 will work for any large data set. Detail paper at https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-017-3927-82199 days ago
FMLRC: a long-read error correction tool using the multi-string Burrows Wheeler Transform
...ection of long read sequencing using the BWT and FM-index of short-read sequencing data. Given a BWT of the short-read sequencing data, FMLRC will build an FM-index and use that as a...2097 days ago
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