Results for "bwa"
Blogs
Software and Tools to detect structure variation with long reads !!
...e from split-read alignments, high-mismatch regions, and coverage analysis. Please note the current version of Sniffles requires sorted output from BWA-MEM (use -M and -x parameter)...2614 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
...tring graph. List of analysis tools developed for Oxford Nanopore data BWA Fast nanopore data tuned alignment tool https://github.com/lh3/bwa GraphMapMapper for long and...2327 days ago
List of tools frequently used while genome assembly
...1) Miniasm (v. 0.2-r137-dirty) I have used the following mappers minimap2 (v. 2.0rc1-r232) minimap (v. 0.2-r124-dirty) bwa (v. 0.7.12-r1039)...1936 days ago
Basic Structure of Snakemake Pipeline Run !
...-dry-run User can execute rules of interest. snakemake --dry-run all VS. snakemake --dry-run call VS. snakemake --dry-run bwa Run the snakemake file in...941 days ago
Common steps for reads mapping !
...sis. Here are some general steps to follow for mapping reads to a genome: Choose a read mapper: There are many read mappers available, such as BWA, Bowtie, and HISAT2. Choose a...430 days ago
