Results for "c"
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Comment on "Benchmarking Perl Module !"
Benchmarking a Perl module involves measuring the performance of the module in terms of its execution time and memory usage. T...ction(); } Run the benchmark: Call the timethese func...chmark using the timethese function from the Benchmark module...415 days ago
Comment on "A quick guide to Phred scaling"
...probability of an error in each base call in a sequencing re...from 0 to 60. The higher the score, the more confident we are...increase of 10 in the Phred score corresponds to a 10-fold d...score is represented as an ASCII character, with the charact...415 days ago
Comment on "Short-read assembly using Spades !"
...Short-read assembly is the process of constructing a genome sequence...ly using SPAdes: Quality control of raw reads: Before ru...rious tools such as Trimmomatic or FastQC. Running SPAde...of the assembled genome. This can be done using tools such as...415 days ago
- ...hat are widely used in bioinformatics research. Here are some of them:...opular tool for generating synthetic reads based on sequencing tec...d simulator that generates synthetic reads based on the whole geno..., and PacBio. PIRS allows users to customize different sequencing...
415 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
If using conda conda create --name perlENV perlconda activate perlENV conda install -c bioconda perl-bundle-bioperl conda install -c bioconda perl-bioperl416 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
Installing in CONDA env You can check using which perl - it should give you the perl that's located within your conda environment....onda-directory. When you install packages via cpan it will also pr...d 'perl-' to the beginning. In your case, conda install -c biocond...416 days ago
Comment on "Calculate the significance of the difference between two trends"
Useful reading material https://statsandr.com/blog/anova-in-r/418 days ago
Comment on "Short-read assembly using Spades !"
...l for short-read assembly. It can assemble reads generated from Illumina, IonTorrent, PacBio, and Oxford Nanopore seque...: Install SPAdes: SPAdes can be downloaded from the offi...will be saved in a file named contigs.fasta. You can view the...421 days ago
Comment on "Tools for Sequence translation !"
Sequence translation is the process of converting a DNA or RNA sequence into its corresponding prote...t a protein sequence into its corresponding nucleotide sequen...any tools available for sequence translation. The choice of t...421 days ago
Comment on "Tools for Differential expression analysis"
...n analysis is a widely used technique in genomics and transcriptomics research...ial distribution to model the count data and provides methods...tial expression analysis of microarray and RNA-Seq data. It u...ial distribution to model the count data and provides methods...421 days ago
