Results for "calculate"
Blogs
List of gene ontology software and tools
...who wish to analyze spectral counting data from shotgun proteomics. http://pcarvalho.com/patternlab GOssTo GOssTo and GOssToWeb are tools to calculate the semantic similarity betwe...3709 days ago
BBTools for bioinformatician !
...threads, because the insert-size average is calculated on a per-thread basis, which...ach transcript that was covered. To calculate physical coverage stats (regi...----------------------------------------- Calculate heterozygous rate for sequenc...2270 days ago
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Bookmarks
Software developed in pevsner lab
...e Patterns in Trios SNPscan: Data Analysis and Visualization of SNP Data pediSNP: Analyze SNP Data From a Pedigree of Two Generations kcoeff: Calculate Cotterman Coefficients of SNP...3498 days ago
- ...eliability of each aligned column. Use sequence quality data properly. Compare DNA to proteins, with frameshifts. Compare PSSMs to sequences Calculate the likelihood of chance simi...
2978 days ago
- +19 more Bookmarks
Files
- ...to open file './temporarySam' [bwa_aln_core] write to the disk... 0.09 sec[bwa_aln_core] 70778880 sequences have been processed.[bwa_aln_core] calculate SA coordinate... 161.35 sec[b...
2150 days ago
Top-level pages
Most Commonly used Awk by Bioinformatician
...80th: awk 'NR>=20&&NR<=80' input.txt > output.txt calculate the average of column 2: awk...rint x/NR}' input.txt regex (egrep): awk '/^test[0-9]+/' input.txt calculate the sum of column 2 and 3 and...3912 days ago
List of In-silico Binding Site Prediction Tools
...ular surface model (Connolly's surface), all calculated analytically. CASTp can be u...the query. Structural similarity scores are calculated for the query protein's surf...It is designed to analyze proteins channels, calculate pore dimensions and analyze a...3743 days ago
- +4 more Top-level pages
Wire posts
Bio-Scripts
- ...s; #assign strings to variables my $DNA = "GATTACACAT"; my $polyA = "AAAA"; #concatenate two strings my $modifiedDNA = $DNA.$polyA; #calculate the length of $modifiedDNA an...
2916 days ago
Count the frequency of base G in a given DNA sequence
...bin/perl use strict; use warnings; my $DNA = "GATTACACAT"; #initialize $countG and $currentPos my $countG = 0; my $currentPos = 0; #calculate the length of $DNA my $DNAle...2916 days ago
- +24 more Bio-Scripts
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