Results for "callers"
Bookmarks
...rstanding of complex variants, and it may also help in the detection of sequencing and sample preparation issues, testing of aligners and variant-callers, and rapid curation of struct...2766 days ago
SeqMule: Automated human exome/genome variants detection
...some built-in functions, such as pooling consensus calls from various callers, plotting a Venn diagram showing intersection among different callers, and downloading databases. S...2629 days ago
NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data
...ler and a computational pipeline to perform SV calling from low coverage long-read sequencing data. NextSV integrates three aligners and three SV callers and generates two integrated...2112 days ago
- ...e genome. Parliament2 runs a combination of tools to generate structural variant calls on whole-genome sequencing data. It can run the following callers: Breakdancer, Breakseq2, CNVn...
1451 days ago
URMAP, an ultra-fast read mapper
...biased against repetitive regions which are difficult to map and may therefore pose an unrealistically easy challenge to read mappers and variant callers. More at https://www.nc...1297 days ago
QuasiModo - Quasispecies Metric Determination on Omics
...ins the scripts and pipeline that reproduces the results of the HCMV benchmarking study. In this study we evaluated genome assemblers and variant callers on 10 in vitro generated, mix...1057 days ago
Minda: a tool for evaluating structural variant (SV) callers
Minda is a tool for evaluating structural variant (SV) callers that standardizes VCF records for compatibility with both germline and somatic SV callers, benchmarks against a single VCF input file, or benchmarks against an ensemble call set created from multiple VCF input files.48 days ago
