Illumina based assembly pipeline steps !
...lling and sequence quality checks (Nextclade) Individual variant screenshots with annotation tracks (ASCIIGenome) Intersect variants across callers (BCFTools) De novo assembl...890 days ago
2766 days ago
SeqMule: Automated human exome/genome variants detection
...some built-in functions, such as pooling consensus calls from various callers, plotting a Venn diagram showing intersection among different callers, and downloading databases. S...2629 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...mange large projects. Variant Identification Germline Callers IMPUTE2 Description: ph...observed alleles, another file contains link to viewer Somatic Callers Cake Description: stand...2922 days ago
3560 days ago
Minda: a tool for evaluating structural variant (SV) callers
Minda is a tool for evaluating structural variant (SV) callers that standardizes VCF records for compatibility with both germline and somatic SV callers, benchmarks against a single VCF input file, or benchmarks against an ensemble call set created from multiple VCF input files.Tags: Minda, tool, evaluating, structural, variant, SV, callers
48 days ago