Comment on "Benchmarking Perl Module !"
...dule. This program should take the form of a subroutine that runs the code you want to benchmark. Here's an example of a benchmark subroutine that calls a function from a hypothetica...425 days ago
Comment on "Calling variants in non-diploid systems"
...s, but we do not know exactly how many. Thus we will use the --pooled-continuous option of FreeBayes to generate frequency-based variant calls as well as some other options1053 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
Benchmark (or "High-confidence") variant calls and regions:We developed an integra...d by multiple technologies to generate variant calls and regions for use in benchm...g benchmark large indel and structural variant calls, as well as calls in difficul...1569 days ago
Comment on "Structural variation: the hidden genomic treasure"
...ol GRIDSS: the genomic rearrangement identification software suite. A high-speed next-gen sequencing structural variation caller. GRIDSS calls variants based on alignment-g...2712 days ago