Results for "capture"
Bookmarks
Next generation sequencing(NGS) books
Employing different technologies, the purpose of NGS platform is to decode the identity or modification on the nucleotides. NGS platforms evolve quickly and capture the main stream. This bookmark is created to provide NGS online books links.3640 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...de highly accurate alignments, MOSAIK employs a hash clustering strategy coupled with the Smith-Waterman algorithm. This method is well-suited to capture mismatches as well as short i...2919 days ago
- ...ation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods such as Agilent SureS...
2905 days ago
- HybPiper was designed for targeted sequence capture, in which DNA sequencing libraries are enriched for gene...et sequences from high-throughput DNA sequencing reads. Targeted bait capture is a technique for sequencing...
2751 days ago
ERGO 2.0 Bioinformatics suites
ERGO 2.0 provides a systems biology informatics toolkit centered on comparative genomics to capture, query, and visualize sequenced genomes. Using Igenbio's proprietary algorith...2558 days ago
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
...require restriction enzyme such as DNase Hi-C. In practice, HiC-Pro can be used to process dilution Hi-C, in situ Hi-C, DNase Hi-C, Micro-C, capture-C, capture Hi-C or HiChip data. ...2354 days ago
Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data
...lacements and (using the assembly option) deletions up to several kb. It has been extensively tested on whole-genome, exon-capture, and targeted capture data, it has been run on...2031 days ago
TRITEX sequence assembly pipeline for Triticeae genomes
...as never been tested and is not expected to work on heterozygous or autopolyploid genomes. A protocol for generating chromosome-conformation capture sequencing (Hi-C) data suitab...1732 days ago
- ...ton is a caller that detects SNVs/indels by comparing target (foreground) and control (background) samples. cisMuton calls mutations from target capture regions, which are defined by...
1557 days ago
- Beside visualizing chromatin interaction data, you can also seamlessly browse other omics data such as ChIP-Seq or RNA-Seq for the same genomic region, and gain a compl...
1211 days ago
