1702 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
...elegant graphics visualization of chromosomes or chromosomal regions allowing users to map chromosome elements (like genes,SNPs etc...specific range determined based on chromosome length) that, on hover, shows...ents as distinct colors. creating chromosome heatmaps. adjusting chromoso...1695 days ago
mosdepth: fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
...of proportion of bases covered at or above a given threshold for each chromosome and genome-wide.quantized out...gion are covered at the given thresholds.A summary of mean depths per chromosome and within specified regions...1625 days ago
1548 days ago
CLARK: Fast, accurate and versatile sequence classification system
...namely (1) the taxonomic classification of metagenomic reads to known bacterial genomes, and (2) the assignment of BAC clones and transcript to chromosome arms/centromeres (in the abse...1534 days ago
chromosight: Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
Python package to detect chromatin loops (and other patterns) in Hi-C contact maps. Stable version with pip: pip3 install --user chromosight Stable version with co...1497 days ago
CSA: A high-throughput chromosome-scale assembly pipeline for vertebrate genomes
...ess. This typically results in improved contig N50 when compared to current state of the art methods. For smaller vertebrate genomes (~1 Gbp) chromosome scale assemblies can be achie...1145 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologicaly...789 days ago
697 days ago
JASMINE: Jointly Accurate Sv Merging with Intersample Network Edges
This tool is used to merge structural variants (SVs) across samples. Each sample has a number of SV calls, consisting of position information (chromosome, start, end, length), type and...666 days ago