S-plot2: Rapid Visual and Statistical Analysis of Genomic Sequences
S-plot2 creates an interactive, two-dimensional heatmap capturing the similarities and diss...kly evolving coding regions, novel coding regions, and laterally transferred elements.2056 days ago
1951 days ago
UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties
UpSetR generates static UpSet plots. The UpSet technique visualizes set intersect...ables the effective representation of associated data, such as the number of elements in the aggregates and interse...1938 days ago
MGERT: Mobile Genetic Elements Retrieving Tool
MGERT is a computational pipeline for easy retrieving of MGE's coding sequences of a particular family from genome assemblies. MGERT utilizes several established bioinformatic tools combined into single pipeline which hides different technical quirks from an inexperienced user.1828 days ago
Apollo: First instantaneous, collaborative genomic annotation editor available on the Web
Apollo is a plug-in for the JBrowse Genome Viewer. In addition to genes and ps...ncRNAs (snRNA, snoRNA, tRNA, rRNA), miRNAs, repeat regions, and transposable elements; each annotation type has its...1815 days ago
dnaPipeTE: a pipeline designed to find, annotate and quantify Transposable Elements
dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datas...1742 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
chromoMap provides interactive, configurable and elegant gr...omosomal regions allowing users to map chromosome elements (like genes,SNPs etc.) on the...taneously on the same plot. annotating groups of elements as distinct colors. creating...1716 days ago
phyloXML: XML for evolutionary biology and comparative genomics
phyloXML (example) is an XML langua...associated data. PhyloXML provides elements for commonly used features, s...on events. Using these standardized elements allows interoperability betwe...d the provision of <property> elements by phyloXML, extensibility as...1624 days ago
1573 days ago
The Global Alliance for Genomics and Health (GA4GH)
The Global Alliance for Genomics and Health (GA4GH) is a policy-framing and technical standards-setting organization, seeking to enable responsible genomic data sharing...1562 days ago