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...genomic sequence contains not only all protein sequences but also sequences regulating gene expression. A comparison of the genomes of genetically close organisms reveals genes respo...3956 days ago
List of In-silico Binding Site Prediction Tools
...inding sites by homology, by inspecting the protein complexes formed by close homologs of a given query. To...: http://mspc.bii.a-star.edu.sg/tankp/run_depth.html Depth measures the closest distance of a residue/atom...3753 days ago
- ...(["fastqc","-f","fastq","-o", "/home/name/result/","/dev/stdin"],stdin=fopen("read.fastq","r") ,stdout=PIPE,stderr=PIPE) print p.stderr p.stdout.close() More: http://pymotw.com/2...
3558 days ago
Genome Assembly Tools and Software - PART1 !!
.... It combines the information of reference (or close related reference) genome and...d by N-bases) using the homology provided by a closely related reference sequence....n the error calls. GapFiller 1.10 – Close Gaps within Pre-assembled Sca...2695 days ago
Perl Special Vars Quick Reference
...quires /p modifier. $+ Last paren match. $^N Last closed paren match (last submatch)....r. ${^CHILD_ERROR_NATIVE} Native status returned by the last pipe close, backtick (`` ) command, succ...2653 days ago
Tools for bacterial whole genome annotation
...BACAS which classifies and orientates contigs and estimates the sizes of gaps between them; (ii) IMAGE uses paired-end reads to extend contigs and close gaps within the scaffolds; (i...2341 days ago
- ...- - | cut -f 2 | tr -d '\n' | wc -c To split multifasta file into many fasta files: awk '/^>/ {OUT=substr($0,2) ".fa"}; {print >> OUT; close(OUT)}' Input_File To convert...
2226 days ago
My commonly used commands in Bioinformatics
...nbsp; This process (Racon -> MUMmer -> SNP table) solves the problem I originally raised in this issue. So as far as I'm concerned, you can close this issue (or keep it open i...2119 days ago
Parallel Processing with Perl !
...rdquo;);flock $QUAL, LOCK_EX or die “cant lock file $!”;print $QUAL “$output”;flock $QUAL, LOCK_UN or die “$!”;close $QUAL; I would not suggest...2089 days ago
