Results for "clustering"
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Bioinformatics Algorithm Demonstrations and Tutorials
...trated include two approaches to approximate string matching (dynamic programming and Shift-AND numeric approximate matching), Hierarchical Clustering (used in phylogenetic studies...3716 days ago
7th International Conference on Bioinformatics and Computational Biology (BICoB)
...ding, alternative splicing, EST analysis and comparative genomics. Sequence analysis: Multiple sequence alignment, sequence search and clustering, function prediction, motif d...3510 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
...owser RNA-Seq De novo transcript discovery and differential analysis with Cufflinks Differential expression analysis with R/Bioconductor Clustering of large expression datasets...2943 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...data (sequencing technologies, low-coverage and exome) in the 1000 Genomes Project. To provide highly accurate alignments, MOSAIK employs a hash clustering strategy coupled with the Smi...2918 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
...hese do not scale to arbitrarily large genomes and arbitrarily large phylogenetic distances. Results: We present Cnidaria, a practical tool for clustering genomic and transcriptomic da...2891 days ago
Bioinformatics tools and software
...rders of magnitude faster than BLAST. MUSCLE >Multiple sequence alignment. Faster and more accurate than CLUSTALW. UPARSE >OTU clustering for 16S and other marker gene...2873 days ago
- ...h as SILVA Functional analysis using InterPro2GO, SEED, eggNOG or KEGG Bar charts, word clouds, Voronoi tree maps and many other charts PCoA, clustering and networks Supports metada...
2853 days ago
- ...owning (2007) Rapid and accurate haplotype phasing and missing data inference for whole genome association studies by use of localized haplotype clustering. Am J Hum Genet 81:1084-1097....
2759 days ago
- MyCC, an automated binning tool that combines genomic signatures, marker genes and optional contig coverages within one or multiple samples, in order to visualize the metagenomes and to identify the reconstructed genomic fragments. More at http://www.nature.com/articles/srep24175
2632 days ago
CONCOCT: Clustering cONtigs with COverage and ComposiTion
A program for unsupervised binning of metagenomic contigs by using nucleotide composition, coverage data in multiple samples and linkage data from paired end reads. Warn...2629 days ago
