Results for "common"
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Comment on "A quick guide to Phred scaling"
...call. Quality score encoding: The Phred quality scores are typically encoded in the quality score field of the FASTQ file format, which is a common format used for storing seque...430 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...the orthologous genes between the genomes using tools such as OrthoFinder or OrthoMCL. Orthologous genes are genes that are homologous and have a common ancestor, but have diverged d...438 days ago
Comment on "Basic command-line to run BLAST"
...earch: Choose the BLAST program: BLAST has several different programs that are tailored to different types of queries and databases. The most common programs are blastp, blastn,...438 days ago
- ...arily to estimate coverage in reads, NOT as the desired assembly size. Fractional values are allowed: '4.7m' equals '4700k' equals '4700000' Some common options: useGrid=string - Run...
2114 days ago
- Common usage SPAdes: de Bruijn graph based assembler The...utomatic kmer selection. spades.py --careful -o SPAdes_out -1 /common/Assembly_Tutorial/Quality_Control/Sample_1.fastq -2 /common/Assembly_Tutorial/Quality_Con...
2359 days ago
Comment on "RACA: Reference-Assisted Chromosome Assembly"
...nce genome of a closely related species. Chromosomer does not require mate-pair libraries and it offers a number of auxiliary tools that implement common operations accompanying the g...2786 days ago
- ...out_contigBubble.fa -ip1 PE.fa 2>sca_log.txt > platanus gap_close -c out_scaffold.fa -ip1 PE.fa 2>gap_log.txt ***** USAGE ***** COMMON OPTIONS --------------------...
2814 days ago
Comment on "Which of the followings are the best place to study Bioinformatics ?"
...ities and colleges may differ from those in your home country in several ways. For one thing, competative research lab, small class sizes are very common. There may be as few as 10 to...3431 days ago
Comment on "Next generation sequencing in R or bioconductor environment"
We generally receive some common question like ... where to find human reference genome? What is reference annotation, how to download it etc. Here are some resources that I found u...3635 days ago
Comment on "Most Commonly used Awk by Bioinformatician"
I love awk but recommend you to try bioawk . Bioawk is a modified version of awk which will parse some common sequence formats. https://github.com/lh3/bioawk3696 days ago
