Results for "compares"
Bookmarks
Comparative genomics educational material and papers bookmarks
...te of ~2.1 large-scale rearrangements per million years after the divergence from a common cetartiodactyl ancestor ~60 Myr ago2. This rate compares to ~1.9 rearrangements per mi...2747 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...tiation site with great accuracy (96% of the 5' ends in the Ecogene data set are located correctly). Specificity: Prodigal's false positive rate compares favorably with other gene ide...2698 days ago
Many-to-many pairwise alignments of two sequence sets
needleall reads a set of input sequences and compares them all to one or more sequences, writing their optimal global sequence alignments to file. It uses the Needleman-Wunsch alignmen...2161 days ago
transrate: Understanding your transcriptome assembly
Transrate is software for de-novo transcriptome assembly quality analysis. It examines your assembly in detail and compares it to experimental evidence such as the sequencing...2137 days ago
gSearch: a fast and flexible general search tool for whole-genome sequencing
gSearch compares sequence variants in the Genome Variation Format (GVF) or Variant Call Format (VCF) with a pre-compiled annotation or with variants in other genomes. Its search algorithms are subsequently optimized and implemented in a multi-threaded manner.2112 days ago
CoLoRMap: Correcting Long Reads by Mapping short reads
...ected regions by local assembly of unmapped mates of mapped short reads. Our results on bacterial, fungal and insect data sets show that CoLoRMap compares well with existing hybrid cor...2099 days ago
QUAST-LG: Versatile genome assembly evaluation
QUAST-LG-a tool that compares large genomic de novo assemblies against reference sequences and computes relevant quality metrics. Since genomes generally cannot be reconstructed c...2033 days ago
IQ-TREE: Efficient software for phylogenomic inference
A fast and effective stochastic algorithm to infer phylogenetic trees by maximum likelihood. IQ-TREE compares favorably to RAxML and PhyML in terms of likelihoods with simila...1917 days ago
- Ability to detect, quantify, and visualize complex and de-novo splicing variations from RNASeq. MAJIQ’s accuracy compares favorably to other algorithms. MAJIQ 2 is *way...
1410 days ago
- Syri compares alignments between two chromosome-level assemblies and identifies synteny and structural rearrangements.
718 days ago
