Comparative genomics educational material and papers bookmarks
...te of ~2.1 large-scale rearrangements per million years after the divergence from a common cetartiodactyl ancestor ~60 Myr ago2. This rate compares to ~1.9 rearrangements per mi...2747 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...tiation site with great accuracy (96% of the 5' ends in the Ecogene data set are located correctly). Specificity: Prodigal's false positive rate compares favorably with other gene ide...2698 days ago
Awesome perl frameworks, libraries and software - PART 4
...ics on Unix systems gvalkov/gitolite-sshkey-form - A web app for submitting ssh public keys directly to gitolite ftilmann/latexdiff - Compares two latex files and marks up...2508 days ago
List of In-silico Binding Site Prediction Tools
...lar sites on protein surfaces by local surface structure alignment. It compares the query protein to members...inding sites in protein structures. Given a protein structure, Pfinder compares it with a set of 215 highly c...3758 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...llumina, SOLiD and VCF; Output: standard file format used is a simple tab delimited file (.sft, .tsv) Genome Track Analyzer Description: compares genome tracks; allows user to...2923 days ago
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Tags: Syri, compares, alignments, chromosome-level, assemblies, synteny, structural, rearrangements
718 days ago
Comment on "Basic command-line to run BLAST"
BLAST compares a query sequence to a database of known sequences and identifies the most similar matches. This is useful for identifying the function of a newly discovered...435 days ago