Results for "concept"
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Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish builds on the concept of coverage plots and aims to assist (amongst othe...2911 days ago
- SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation o...
2710 days ago
- quickmerge uses a simple concept to improve contiguity of genome assemblies based on long molecule sequences, often with dramatic outcomes. The program uses information from assembl...
2699 days ago
- Lifemap is an interactive tool to explore the WHOLE NCBI TAXONOMY. The concept used in Lifemap is similar to the one used in cartography with tools like Google Maps© or Open Stre...
2587 days ago
GeneProf: analysis of high-throughput sequencing experiment
...e high-throughput data within a minimum of hands-on time. (cp. SubConcept 'Analysis Wizards'). Versati...s, which can be combined freely into sophisticated workflows (cp. Concept 'Workflows'). Integrated Ana...2500 days ago
REGEN: Ancestral Genome Reconstruction for Bacteria
...on. The reconstruction can be performed by either a maximum parsimony or a maximum likelihood method. Gene content reconstruction is based on the concept of neighboring gene pairs. RE...2257 days ago
mmgenome: Tools for extracting individual genomes from metagneomes
The mmgenome toolbox enables reproducible extraction of individual genomes from metagenomes. It builds on the multi-metagenome concept, but wraps most of the process of extr...2100 days ago
QUAST-LG: Versatile genome assembly evaluation
...ality metrics. Since genomes generally cannot be reconstructed completely due to complex repeat patterns and low coverage regions, we introduce a concept of upper bound assembly for a...2024 days ago
Versatile genome assembly evaluation with QUAST-LG
...of alignment analyzing modules New k-mer-based completeness and correctness metrics BUSCO added for enhanced reference-free analysis The concept of upper bound assembly...1966 days ago
What is the hologenome concept of evolution?
All multicellular organisms are colonized by microbes, but a gestalt study of the composition of microbiome communities and their influence on the ecology and evolution...1192 days ago
